FY2018 (Apr 2018〜 Mar 2019)
Date Speaker Affiliation Title
Oct 26, Fri 2:00pm Stefan Haar Senior Researcher and Head of MExICo team, INRIA Saclay center, France Let's have a new update on Boolean Networks ! [abstract]
Oct 18, Thu 2:00pm Susumu Goto Database Center for Life Science (DBCLS), Joint Support-Center for Data Science Research (DS Cetner), Research Organization of Information and Systems (ROIS)
Visiting Professor of the Institute for Chemical Research
Life science database integration based on semantic web technology [abstract]
Sep 25, Tue 11:00am Jiangning Song Senior Research Fellow and Group Leader, Monash Biomedicine Discovery Institute (BDI), Monash University, Melbourne, Australia Harnessing the power of machine-learning techniques to address sequence classification problems in the era of biomedical big data [abstract]
Sep 14, Fri 2:00pm Samuel Chaffron CNRS Scientist, Laboratoire des Sciences du Numérique de Nantes An eco-systems view of complex microbiomes [abstract]
Aug 23, Thu 2:00pm Roderic Guigó Head of the Bioinformatics and Genomics Program. Center for Genomic Regulation (CRG) The molecular anatomy of the human body [abstract]
Jul 26, Thu 2:00pm Anne Kupczok Institute of General Microbiology, Kiel University, Kiel, Germany Evolutionary rate estimation for bacteriophages based on time series data sets [abstract]
Jul 24, Tue 2:00pm Dukka Bahadur KC Computational Science and Engineering Department North Carolina A&T State University Greensboro, NC, USA Computational prediction of post-translational modification sites [abstract]
Jul 10, Tue 2:00pm Peter Petschner MTA-SE Neuropsychopharmacology and Neurochemistry Research Group, Department of Pharmacodynamics, Semmelweis University, Hungary Complexity of environment-dependent genetic effects in major depression through the scope of 5-HTTLPR [abstract]
May 25, Fri 2:00pm Yuji Tomaru National Research Institute of Fisheries and Environment of Inland Sea (FEIS), Japan Fisheries Research and Education Agency (FRA), Japan Ecological studies on marine diatom and their infectious viruses [abstract]
Apr 25, Wed 2:00pm Adnan Sljoka Department of Informatics, School of Science and Technology, Kwansei Gakuin University, Japan Lifting the curtain: probing allostery and other biological secrets with high throughput rigidity analysis [abstract]
Apr 24, Tue 3:30pm Ruth-Anne Sandaa Marine Microbiology Group, Department of Biological Science, Bergen University, Norway Living with the enemy: virus-host relationship in the ocean [abstract]
Apr 24, Tue 2:00pm Masanori Shimono Graduate School of Medicine, Kyoto University, Japan (Hakubi/LEADER researcher) Connecting multi-scale networks in the brain [abstract]

   会場−京都大学化学研究所バイオインフォマティクスセンター CB-207

FY2017 (Apr 2017〜 Mar 2018)
Date Speaker Affiliation Title
Mar 8, Thu 2:00pm Dr. Jean-Michel Claverie Structural & Genomic Information Lab. Mediterranean Institute of Microbiology Professor of Medicine (PU1/PH)- Genomics and Bioinformatics Aix-Marseille University School of Medicine 1) ACD 2.0: new general purpose statistical tools 2) the challenge of annotating G+C rich giant virus genomes [abstract]
Dec 18,Mon 2:00pm Dr. Yingying Xu Postdoctoral fellow, HIIT (Helsinki Institute of Information Technology), Finland Inverse finite-size scaling for high-dimensional significance analysis [abstract]
Nov 30,Thu 2:00pm Jun Sese Team leader of AIST on machine learning (Visiting associate professor of Bioinformatics Center) Statistical significance of marker combinations: theory and applications [abstract]
Nov 21,Tue 1:30pm Limin Li Associate professor, Xi'an Jiaotong University Multi-view learning models and the application in cancer subtype discovery [abstract]
Oct 19,Thu 2:00pm Wim Hordijk Senior Fellow Konrad Lorenz Institute for Evolution and Cognition Research, Austria Autocatalytic Sets and the Origin of Life [abstract]
Oct 13,Fri 2:45pm Yuji Shinano Zuse Institute Berlin How to harness over a Million CPU Cores to Solve a Single Hard Mixed Integer Programming Problem on a Supercomputer [abstract]
Oct 13,Fri 2:00pm Stefan Vigerske GAMS, Zuse Institute Berlin MINLP Solver Technology [abstract]
Sep 8,Fri 3:00pm Jie Liang Professor, Department of Bioengineering, University of Illinois at Chicago, USA Computational modeling of cellular fate: control of stochastic networks and 3D chromsome folding [abstract]
Aug 31,Thu 2:00pm Fuyi Li Ph.D student Department of Biochemistry and Molecular Biology & Biomedicine Discovery Institute, Monash University, Australia PROSPERous: a bioinformatics tool for rapid, high-throughput prediction of potential cleavage sites of 90 proteases by combining multiple scoring functions and logistic regression [abstract]
Aug 4,Fri 2:00pm Hsiuying Wang Professor, Institute of Statistics, National Chiao Tung University, Taiwan Anti-NMDA Receptor Encephalitis and Vaccination [abstract]
Jul 21,Fri 2:00pm Kentaro Tomii Intelligent Bioinformatics Research Team, Artificial Intelligence Research Center, Advanced Industrial Science and Technology (AIST) A novel amino acid substitution matrix for identifying distantly related proteins [abstract]
Jul 6,Thu 2:00pm Kazuhiro Takemoto Associate Professor Department of Bioscience and Bioinformatics, Kyushu Institute of Technology, Japan Stability of ecological communities: A network perspective [abstract]
Apr 14,Fri 2:00pm Nicolas Wicker Professor, Lille 1 University, France Multidimensional fitting and projection under pairwise distance control [abstract]
Apr 10,Mon 2:00pm Khoat Than Head of Data Science Laboratory, School of Information and Communication Technology, Hanoi University of Science and Technology Probabilistic Topic Modeling for Discovering Hidden Semantics from Massive Data [abstract]

   会場−京都大学化学研究所バイオインフォマティクスセンター CB-207

FY2016 (Apr 2016〜 Mar 2017)
Date Speaker Affiliation Title
Feb 28,Tue 2:00pm Kazuki Izawa PhD student, Tokyo Institute of Technology, Japan Endomicrobium endosymbionts of termite-gut protists have functional defense systems against bacteriophages [abstract]
Feb 24,Fri 2:00pm Einoshin Suzuki Professor, Kyushu University, Japan Recovering a Partial Decision List from Noisy Data and an Approximate Theory Based on Minimum Encoding [abstract]
Feb 2,Thu 2:30pm Satoshi Hiraoka PhD Student, Tokyo University, Japan Bioinformatic Analyses Reveal Microbial Adaptation to Environmental Changes and Transport across Sea, Land, and Sky [abstract]
Feb 2,Thu 2:00pm Yohei Kumagai PhD Student, Tokyo University, Japan Different adaptive strategies of photoheterotrophic and heterotrophic marine Flavobacteria [abstract]
Dec 22, Thu 2:00pm Hisashi Endo Postdoctoral Researcher, Hokkaido University, Japan Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean [abstract]
Dec 13, Tue 11:00am Andrei Zinovyev Research Engineer, Institut Curie, France The shortest path is not the one you know: application of biological networks in precision oncology research [abstract]
Nov 30, Wed 2:00pm Jiangning Song Research Fellow and team leader, Monash University, Australia Systematic identification of secreted effector proteins of bacterial secretion system IV: a bioinformatics study [abstract]
Nov 24, Wed 2:30pm M. Michael Gromiha Associate Professor, Indian Institute of Technology Madras, India Protein interactions: Integrating computational methods and experimental data for understanding the binding specificity [abstract]
Nov 16, Wed 2:00pm Dušanka Janežič Professor, University of Primorska, Slovenia Protein Binding Sites Dynamics in Drug Discovery [abstract]
Oct 11, Tue 2:00pm Kin Fai Au Assistant Professor, University of Iowa, USA Transcriptome analysis at the gene isoform level using hybrid sequencing [abstract]
Oct 4, Tue 2:00pm Kimihito Ito Professor, Hokkaido University, Japan Combining Population Genetics of Pathogens and Epidemiology of Infectious Diseases [abstract]
Sep 26, Mon 3:15pm Ruth-Anne Sandaa Professor, Bergen University, Norway Marine viruses: small but important [abstract]
Sep 2, Fri 2:00pm Shangfeng Zhu Associate Professor, Fudan University, China DrugE-Rank: improving drug-target interaction prediction of new candidate drugs or targets by ensemble learning to rank [abstract]
Aug 29, Mon 2:00pm DeepMeSH and MeSHLabeler: Recent progress in large-scale MeSH indexing [abstract]
Aug 4, Thu 2:00pm Ernst-Walter Knapp Professor, Free University of Berlin, Germany ProPairs: A Data Set for Protein−Protein Docking [abstract]
Jul 1, Fri 2:00pm Yutaka Akiyama Professor, Tokyo Institute of Technology, Japan Massively parallel bioinformatics computing on K-computer, TSUBAME, and Azure: Metagenome analysis and exhaustive protein-protein interaction prediction [abstract]
Jun 21, Tue 3:00pm Gregor Hendel
(via Skype)
Researcher, Zuse Institute Berlin, Germany How to solve Integer Optimization Problems with SCIP [abstract]
3:35pm Yuji Shinano Researcher, Zuse Institute Berlin, Germany Towards Using over a Million CPU Cores to Solve Previously Unsolved Mixed Integer Programming Problem Instances [abstract]
Apr 20, Wed 2:00pm Jinn-Moon Yang Professor, National Chiao Tung University, Taiwan NetPharmalogs for drug discovery and applications [abstract]
Apr 14, Thu 2:00pm Colin de la Higuera Professor, University of Nantes, France Machine learning is about intelligent forgetting [abstract]

   会場−京都大学化学研究所バイオインフォマティクスセンター CB-207

平成27年度 (2015年4月〜2016年3月)
日時 スピーカー 所属機関 タイトル
2月24日(水) 2:00pm Ryo Yoshinaka Assistant Professor, Kyoto University, Japan Distributional learning of some context-free languages and beyond [abstract]
12月17日(木) 11:00am Graziano Chesi Associate Professor, The University of Hong Kong, Hong Kong Stability and Performance Analysis of 2D Mixed Continuous-Discrete-Time Systems [abstract]
11月24日(火) 2:00pm
Tomoharu Iwata Research Scientist, NTT Communication Science Laboratries, Japan Unsupervised Cluster Matching for Relational Data [abstract]
11月12日(金) 2:00pm Wataru Iwasaki Associate Professor, University of Tokyo, Japan Bioinformatic Approaches for Comprehensive Description of Biological Systems [abstract]
10月23日(金) 2:00pm Aapo Hyvarinen Professor, University of Helsinki, Finland Independent component analysis: recent advances [abstract]
10月20日(火) 2:00pm Samuel Kaski Professor, Aalto University, Finland Bayesian factorization of multiple data sources [abstract]
9月15日(木) 2:00pm Jiangning Song Senior Research Fellow, Monash University, Australia The Predictive Power of Machine Learning Techniques in Data-driven Biomedical Knowledge Discovery: My Structural Bioinformatics Journey [abstract]
5月28日(木) 2:00pm Pascal Hingamp Associate Professor, Aix-Marseille University, France First insights from the Tara Oceans global plankton sampling expedition [abstract]
5月7日(木) 10:30am Inna Kuperstein ACSN project manager, Institut Curie, U900 INSERM, Mines Paris Tech, France Atlas of Cancer Signaling Network and NaviCell: comprehensive resource and web tool for data analysis and interpretation [abstract]
5月7日(木) 11:30am Emmanuel Barillot Head of Department of Computational Systems Biology of Cancer, Institut Curie, U900 INSERM, Mines Paris Tech, France Exploiting synthetic interactions and signaling network modeling to combat cancer [abstract]

   京 都−京都大学化学研究所バイオインフォマティクスセンター CB-207
   東 京−東京大学医科学研究所ヒトゲノム解析センター

平成26年度 (2014年4月〜2015年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 3月18日(水) 3:00pm Fabrizio Smeraldi Lecturer, Queen Mary, University of London On time, complexity and Thermodynamics: some surprising facts about Brownian computing [abstract]
京都 3月18日(水) 2:00pm Fabrizio Smeraldi Lecturer, Queen Mary, University of London Handling missing features with boosting algorithms for protein-protein interaction prediction [abstract]
京都 3月17日(火) 11:00am Gregory Kucherov Professor, CNRS/LIGM Marne-la-Vallée, France Efficient index-based filtering for NGS read processing [abstract]
京都 2月6日(金) 3:00pm Emna Ben Abdallah PhD student at Ecole Centrale de Nantes, IRCCyN, Nantes, France Exhaustive dynamic analysis of Process Hitting models through Answer Set Programming [abstract]
京都 2月6日(金) 2:00pm Morgan Magnin JSPS Fellow, National Institute of Informatics, Tokyo, Japan Analyzing regulation thanks to a concurrent dynamic framework: the Process Hitting [abstract]
京都 1月7日(水) 2:00pm Makoto Yamada Research Scientist, Yahoo! Labs Minimum Redundancy Maximum Relevance Feature Selection for Large and High-dimensional Data [abstract]
京都 9月24日(水) 2:00pm Romain Blanc-Mathieu Research associate at Institut Sophia Agrobiotech, INRA, France Population Genomics of Ostreococcus tauri: Diversity and Evolution of the Smallest Photosynthetic Eukaryote [abstract]
京都 9月16日(火) 2:00pm Colin de la Higuera University of Nantes Learning Probabilistic Context-Free Grammars [abstract]
京都 9月2日(火) 11:00am Peter Floderus Lund University A polynomial to count induced subgraphs quickly [abstract]
京都 7月14日(月) 2:00pm Shin-ichi Morishita University of Tokyo Novel insights into mid-sized heterozygous structural variations and DNA methylome in a diploid human genome through SMRT sequencing [abstract]
京都 5月29日(木) 11:00am Michael Ng Department of Mathematics, Hong Kong Baptist University Spectral Clustering for Tensor Data [abstract]
京都 4月3日(木) 2:00pm Maricel G. Kann University of Maryland, Baltimore County A Protein-Domain Approach for the Analysis of Disease Mutations [abstract]

平成25年度 (2013年4月〜2014年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 (CB316) 3月19日(水) 2:00pm Tetsuo Shibuya Associate Professor, Human Genome Center, Institute of Medical Science, University of Tokyo de Bruijn Graph Problems [abstract]
京都 3月19日(水) 11:00am Ichiro Takeuchi Associate Professor, Nagoya Institute of Technology An Algorithmic Framework for Computing Validation Performance Bounds by Using Suboptimal Models [abstract]
京都 3月18日(火) 2:00pm Takeki Uehara Manager, Strategic Development Department, Shionogi & Co., Ltd. Application of toxicogenomics for drug toxicity screening [abstract]
京都 12月26日(木) 11:00am Raymond Wan School of Life Sciences, The Chinese University of Hong Kong Transformations for Compressing Quality Scores of Next Generation Sequencing Data [abstract]
京都 11月21日(木) 1:30pm Marco Cuturi Graduate School of Informatics, Kyoto Univ. Sinkhorn Distances: Lightspeed Computation of Optimal Transport [abstract]
京都 11月11日(月) 11:00am Hanah Margalit The Hebrew University The multifaceted impact of post-transcriptional regulation by non-coding RNAs [abstract]
京都 10月18日(金) 2:00pm Tetsuo Shibuya The University of Tokyo Indexing Protein 3-D Structures for Faster Structural Similarity Queries [abstract]
京都 10月15日(火) 1:30pm Man Yi Yim The University of Hong Kong Impact of intrinsic biophysical diversity on the activity of spiking neurons [abstract]
京都 10月7日(月) 1:30pm Michal Kolar Academy of Sciences of the Czech Republic, Prague Graph alignment of protein-protein interaction networks: From interactions to functional annotation [abstract]
京都 7月19日(金) 2:00pm Hiroto Saigo Kyushu Institute of Technology Multiple response regression for graph mining [abstract]
京都 7月12日(金) 2:00pm Jean-Philippe.Vert Mines ParisTech - Curie Institute Flip-Flop: Fast lasso-based isoform prediction from RNA-seq data [abstract]
京都 6月11日(火) 11:00am Toby Dylan Hocking Tokyo Institute of Technology SegAnnDB: interactive web-based genomic segmentation [abstract]
京都 6月5日(水) 1:30pm Hongmin Cai South China University of Technology Feature Selection via Local Hyperplane Approximation [abstract]
京都 5月24日(金) 2:00pm Graziano Chesi The University of Hong Kong Equilibria and Stability Investigation in Genetic Regulatory Networks [abstract]
京都 5月7日(火) 2:00pm Andrzej Lingas Lund University, Sweden Counting and detecting small subgraphs via equations [abstract]
京都 4月18日(木) 1:30pm Ia Kusradze Eliava Institute of Bacteriophages, Microbiology and Virology Characterization of Antibiotic resistant Acinetobacter baumannii Specific Phages for Creation the Therapeutic-preventive Preparation [abstract]
京都 4月18日(木) 1:30pm Hanaa Hibishy Tanta University, Egypt Cloning and Functional Characterization of PTPCD2 a Novel Cell Cycle Related Protein Tyrosine Phosphatase That Regulates Mitotic Exit [abstract]
京都 4月9日(火) 2:00pm Koichi Hirata Kyushu Institute of Technology Tai mapping hierarchy and variations of tree edit distance [abstract]

平成24年度 (2012年4月〜2013年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 1月22日(火) 2:00pm Andrew Knyazev Mitsubishi Electric Research Laboratories Novel data clustering for microarrays and image segmentation [abstract]
京都 12月10日(月) 1:30pm Sylvain Guillemot MTA SZTAKI, Hungary Constructing agreement supertrees [abstract]
京都 11月1日(木) 5:00pm Limsoon Wong School of Computing, National University of Singapore A Novel Principle for Childhood ALL Relapse Prediction [abstract]
京都 10月25日(木) 3:00pm Didier Rognan Centre national de la recherche scientifique (CNRS), France Fingerprinting protein cavities and protein-ligand complexes for drug design [abstract]
京都 9月24日(月) 11:00am Kazuyoshi Ikeda EMBL-EBI Overview of the ChEMBLdb: A database of drug, lead and target data [abstract]
京都 9月13日(木) 2:00pm Baruch Barzel The Center for Complex Network Research at Northeastern University, The Dana Farber Cancer Center at Harvard Medical School Boston, Massachusetts Scaling Theory of Network Dynamics: What Can Three Numbers Teach Us about a Complex System ? [abstract]
京都 9月10日(月) 3:30pm Ryohei Fujimaki NEC Laboratories America Factorized Asymptotic Bayesian Hidden Markov Models [abstract]
京都 7月2日(月) 11:00am Luis Carvalho Department of Mathematics & Statistics, Boston University, USA Graph-regularized centroid estimation on a hierarchical Bayesian model for Genome-Wide Association Studies [abstract]
京都 5月28日(月) 11:00am Daisuke Kihara Department of Biological Sciences/Computer Science, Purdue University, West Lafayette, IN, USA Predictions of Structures of Protein Interactions [abstract]
京都 5月23日(水) 2:30pm Jun Ohkubo Graduate School of Informatics,Kyoto University Counting statistics and related topics [abstract]
京都 4月16日(月) 11:00am Jesper Jansson The Hakubi Project at Kyoto University Combinatorial Algorithms for Building a Phylogenetic Supertree [abstract]

平成23年度 (2011年4月〜2012年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 2月14日(火) 2:00pm Hiroyuki Ogata Aix-Marseille University Giant viruses in marine environments [abstract]
2:45pm Pascal Hingamp Aix-Marseille University What can metagenomics tell us about marine large eukaryotic viruses? Preliminary exploration of TARA -OCEANS genomic data [abstract]
京都 1月11日(水) 11am Von-Wun Soo Department of Computer Science and Institute of Information Systems and Applications, National Tsing Hua University, Taiwan Identify Drug Co-target to Fight Drug Resistance Based on a Random Walk Model [abstract]
京都 1月6日(金) 11am Jiangning Song Department of Biochemistry& Molecular Biology Faculty of Medicine, Monash University, Australia Predicting substrate cleavage sites of proteases using machine learning techniques and sequence-derived features [abstract]
京都 12月21日(水) 10am Kiyoko F. Aoki-Kinoshita Soka University Development of a Multiple Glycan Alignment Tool [abstract]
京都 11月18日(金) 4pm Alexandre Varnek Laboratory of Chemoinformatics, University of Strasbourg, France Chemical space: design, visualization and navigation [abstract]
京都 10月11日(火) 11am Dmitrij Frishman Technische Universitat Munich, Germany Exploring the fold space of membrane proteins [abstract]
京都 9月26日(月) 11am Masayuki Karasuyama Tokyo Institute of Technology Optimal Solution Path Algorithm for Machine Learning: Analytical Approach to Solving Support Vector Machines [abstract]
京都 9月13日(火) 2pm Huarong Zhou Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences Type 2 diabetes, is it an intestinal disease? [abstract]
京都 8月1日(月) 11am Zenmei Ohkubo University of Illinois at Urbana-Champaign Spontaneous Binding and Insertion of Membrane-Anchoring Proteins Captured by a Highly Mobile Membrane Mimetic (HMMM) Model [abstract]
京都 6月29日(水) 11am Keiko Udaka Department of Immunology, Kochi Medical School Development of a peptide immunotherapy for malignant tumors [abstract]
京都 6月15日(水) 2pm Kengo Sato Department of Biosciences and Informatics, Keio University Fast and accurate predictions of RNA structures using integer programming [abstract]
京都 6月14日(火) 11am Jose Nacher Future University-Hakodate Discoveries from non-randomness in complex cellular networks and systems [abstract]
6月2日(木) 11am Frantisek Capkovic Institute of Informatics, Slovak Academy of Sciences Modularity and Supervision in Agents Cooperation [abstract]
京都 4月21日(木) 11am Motoaki Kawanabe Fraunhofer FIRST and TU Berlin, Germany Classifying Visual Objects with many Kernels [abstract]

平成22年度 (2010年4月〜2011年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 2011年
11am Shanfeng Zhu Fudan University, China Efficient Semi-Supervised MEDLINE Document Clustering [abstract]
京都 3月7日(月) 11am Mikita Suyama Graduate School of Medicine, Kyoto University Searching for regulatory sequences of alternative splicing by using genome sequence alignment and RNA-seq data [abstract]
3月1日(火) 11am 伊藤真純 北海道大学情報科学研究科 木構造を利用したアノテーション手法[abstract]
京都 2月3日(木) 11am Tadashi Yamamoto Department of Structural Pathology, Institute of Nephrology, Graduate School of Medical and Dental Sciences, Niigata University Human Proteome Project and Kidney Disease Project[abstract]
12月2日(木) 1:30pm Jiuyong Li School of Computer and Information Science, University of South, Australia Using data mining methods to discover regulatory roles of microRNA in Data[abstract]
京都 11月24日(水) 11am Masashi Sugiyama Tokyo Institute of Technology, Japan Density Ratio Estimation: A New Versatile Tool for Machine Learning [abstract]
京都 11月16日(火) 4:30pm Kiyoshi Asai Department of Computational Biology, University of Tokyo RNA配列情報解析技術の進展 [abstract]
京都 11月11日(木) 11am Atsuyoshi Nakamura Graduate School of Information Science and Technology, Hokkaido University Algorithms for Finding a Minimum Repetition Representation of a String [abstract]
京都 11月5日(金) 11am Luonan Chen Key Laboratory of Systems Biology, Chinese Academy of Sciences, China Screening Biomolecular Networks Based on High Throughput Data [abstract]
京都 10月28日(木) 11am Alexandre Varnek Laboratory of Chemoinformatics, UMR 7177 CNRS, University of Strasbourg Condensed Graphs of Reaction: an efficient way of reactions mining [abstract]
京都 9月24日(金) 11am Marco Cuturi Graduate School of Informatics Kyoto University Autoregressive Kernels for Multivariate Time Series [abstract]
11am Ernst-Walter Knapp Institute of Chemistry & Biochemistry, Free University of Berlin, Germany SPARROW a Protein secondary structure predictor, variations on an old theme [abstract]
11am Kimmen Sjölander Berkeley Phylogenomics Group, University of California, Berkeley New methods for functional site identification, orthology prediction and multiple sequence alignment[abstract]
京都 7月1日(木) 2pm Serafim Batzoglou Stanford University, Department of Computer Science Extracting medical and ancestry information from genomes [abstract]

平成21年度 (2009年4月〜2010年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 3月23日(火) 2pm 山本真基 東海大学 充足可能性問題(SAT問題)を解くO(1.234^m)時間厳密アルゴリズム [abstract]
京都 3月9日(火) 2pm Narayan Behera Centre for Ecological Research, Kyoto University An evolutionary data mining algorithm to find the candidate genes from microarray gene expression data [abstract]
3月8日(月) 11am Masaki Kato Structural Glycobiology Team, RIKEN Advanced Science Institute Bioinformatics for glycobiology
From the viewpoints of wet laboratory [abstract]
京都 3月1日(月) 11am Nicolas Wicker University of Strasbourg, France Sampling problems, from theory to biology [abstract]
京都 1月25日(月) 11am Shanfeng Zhu Fudan University, China Improve the MHC II-peptide binding prediction with ensemble approaches [abstract]
京都 12月10日(木) 2pm Ling-Yun Wu Institute of Applied Mathematics, Chinese Academy of Sciences, China Conditional random patternal gorithm for LOH inference and segmentation [abstract]
Yong Wang Institute of Applied Mathematics, Chinese Academy of Sciences, China Probing the organizational and evolutionary principles of bio-molecularnetworks by subnetworks [abstract]
Jiangning Song Department of Biochemistry and Molecular Biology, Monash University, Australia Characterizing substrate specificity of proteases using machine learning techniques [abstract]
京都 11月30日(月) 11am Johann Gasteiger University of Erlangen-Nuremberg, Molecular Networks GmbH, Germany Multidimensional explorations into biochemical pathways [abstract]
京都 11月16日(月) 11am Avraham Melkman Ben-Gurion University of the Negev, Israel Integrating gene annotations into data analysis [abstract]
京都 10月5日(月) 11am Kimihito Ito Department of Global Epidemiology, Research Center for Zoonosis Control, Hokkaido University Prediction of the mutation of the influenza virus gene [abstract]
京都 9月7日(月) 11am Koji Tsuda CBRC, AIST, Tokyo Mining frequent subgraphs from linear graphs [abstract]
京都 7月16日(木) 1:30pm Yong Wang Chinese Academy of Sciences Probing the regulatory networks by computational models [abstract]
2:30pm Zhiping Liu Chinese Academy of Sciences, Osaka Sangyo University Dynamically dysfunctional protein interactions in the development of Alzheimer's disease [abstract]
京都 7月6日(月) 11am Jean-Philippe Vert Mines ParisTech, Institut Curie, INSERM U900 Global alignment of protein-protein interaction networks by graph matching methods [abstract]
5月20日(水) 2pm Gabriel Valiente Technical University of Catalonia, Spain Alignment of trees and directed acyclic graphs in computational biology [abstract ]
4月27日(月) 11am 中谷 明弘 東京大学大学院新領域創成科学研究科 KEGG OC: 網羅的なオーソログクラスタの自動生成 [abstract]
4月23日(木) 1pm Katsumi Inoue National Institute of Informatics, Japan Evaluating abductive hypotheses using an EM algorithm on BDDs [abstract]
1:40pm Andrei Doncescu LAAS-CNRS, France Cancer diagnosis by abductive reasoning [abstract]
京都 4月20日(月) 11am See-Kiong Ng Institute for Incomm Research, A*STAR, Singapore Unraveling the building blocks of protein-protein interaction networks [abstract]

平成20年度 (2008年4月〜2009年3月)
場所 日時 スピーカー 所属機関 タイトル
11am 八杉 悦子 東京大学大学院医学系研究科・メタボローム講座 日本脂質生化学会のデータベース LipidBank [abstract]
2月2日(月) 11am Shanfeng Zhu Fudan University, China Enhancing MEDLINE document clustering by Incorporating MeSH semantic similarity [abstract]
1月19日(月) 11am Paul Horton Computational Biology Research Center, AIST, Japan Mitochondrial β-barrel proteins, an exclusive club? [abstract]
12月22日(月) 11am Hiroyuki Ogata CNRS, France Host-like genes in giant DNA viruses [abstract]
11月17日(月) 11am Tatiana Tatusova NCBI/NLM/NIH New protein clusters database at the national center for biotechnology information [abstract]
11月10日(月) 11am Kimmen Sjölander University of California, Berkeley Boosting biological discovery through phylogenomics [abstract]
10月27日(月) 11am Yoshinobu Igarashi National Institute of Biomedical Innovation Construction and analysis of a proteolytic event database, cutDB [abstract]
9月24日(水) 4pm Yoshihiro Yamanishi Institut Curie, Paris, France Prediction of drug-target interaction networks from the integration of chemical and genomic spaces [abstract]
9月1日(月) 11am Takuji Yamada EMBL Heidelberg Pathway analyses along the genomic data [abstract]
7月25日(金) 3:30pm 齊藤 隆文 東京農工大学・生物システム応用科学府 大規模情報のコンパクトな可視化提示 [abstract]
7月23日(水) 2pm 西岡 孝明 慶應義塾大学・先端生命科学研究所 代謝物質のマススペクトルデータベース Massbank [abstract]
京都 7月22日(火) 11am Oliver Ebenhoh Max-Planck-Institute for Molecular Plant Physiology Modeling the degradation of transitory starch in plant leaves [abstract]
7月11日(金) 1:30pm Bruce Conklin Gladstone Institute of Cardiovascular Disease, UCSF Pathway-oriented functional genomics using WikiPathways, GenMAPP and stem cell biology [abstract]
京都 7月7日(月) 11am Jean-Philippe Vert Ecole des Mines de Paris Inference of biological networks with supervised machine learning [abstract]
京都 6月30日(月) 11am Vo Ngoc Anh The University of Melbourne Impact-based document ranking [abstract]
京都 5月20日(火) 4:30pm 堀本 勝久 産業技術総合研究所・生命情報工学研究センター 記号計算による生体ネットワーク動態解析 [abstract]
京都 5月12日(月) 11am Hirotada Mori Nara Institute of Science and Technology Systematic analysis of genetic interaction of Escherichia coli [abstract]
京都 4月7日(月) 11am Yukako Tohsato College of Information Science and Engineering, Ritsumeikan University Metabolic pathway alignment based on compound similarity [abstract]

平成19年度 (2007年4月〜2008年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 2008年
11am Koji Tsuda Max Planck Institute for Biological Cybernetics Enumeration of condition-specific dense modules in protein interaction networks [abstract]
京都 2月6日(水) 11am Ruisheng Wang Chinese Academy of Science Inferring transcriptional interactions and regulator activities from high-throughput data [abstract]
京都 1月18日(金) 2pm Oliver Sander Max Planck Institute Inferring molecular function from local function conservation in sequence and structure space [abstract]
京都 2007年
2pm 田口 良 東京大学大学院・医学系研究科 脂質メタボローム解析の基盤技術と脂質局在化の制御と肥満、炎症等の病態解析への応用 [abstract]
京都 11月5日(月) 11am Nicolas Joannin Karolinska Institute About RIFINs: from gene family to function, or the complexity of antigenically variable protein families [abstract]
京都 10月1日(月) 11am Frederique Lisacek Swiss Institute of Bioinformatics Proteomics data analysis in clinical applications [abstract]
京都 9月25日(火) 11am John Weinstein National Cancer Institute The Miner Suite and its application to cancer: bioinformatic resources that complement KEGG [abstract]
京都 9月10日(月) 11am Kazuharu Arakawa Graduate School of Media and Governance, Keio University Comprehensive modeling environment for the simulation of whole-cell [abstract]
京都 5月14日(月) 11am Koji Tsuda Max Planck Institute for Biological Cybernetics Mathematical programming methods for learning from structured data [abstract]
京都 5月7日(月) 11am Denis Thieffry Universitee de la Mediterranee Logical modelling of genetic regulatory networks [abstract]
京都 4月23日(月) 11am Yang Dai University of Illinois at Chicago Reconstruction of functional gene networks based on published literature [abstract]
京都 4月17日(火) 1:30pm 時松 敏明 東京大学大学院・新領域創成科学研究科 植物オミックス研究のための代謝経路・二次代謝産物データベースの構築 [abstract]

平成18年度 (2006年4月〜2007年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 2007年
11am Shin Ishii Nara Institute of Science and Technology Machine learning approaches to gene expression analyses [abstract]
京都 2月8日(木) 2pm Jean-Philippe Vert Ecole des Mines de Paris Kernel methods in computational biology [abstract]
京都 1月15日(月)
10am ケミカルアノテーションワークショップ
横浜 2006年
10:30am バイオインフォマティクス教育プログラム国際シンポジウム
京都 10月23日(月) 11am Ovidiu Radulescu Universite de Rennes 1 Complex biological systems : hierarchical models, robustness, and qualitativ e modeling [abstract]
京都 10月16日(月) 11am Yoshinobu Igarashi Burnham Institute for Medical Research CutDB - a proteolytic event database [abstract]
京都 10月13日(金) 11am Alex J. Smola National ICT Australia Maximum mean discrepancy for distribution testing [abstract]
京都 10月2日(月) 11am Mats Wahlgren Karolinska Inst. Understanding severe malaria [abstract]
京都 9月25日(月) 11am Hisako Ichihara Bioinformatics Center, Institute for Chemical Research, Kyoto University Positive selection in the CSP-ComD system of streptococcal species [abstract]
京都 7月27日(木) 2pm Ron Pinter Israel Institute of Technology Static and dynamic methods for the analysis of biological networks [abstract]
京都 7月10日(月) 11am Ken Ichiro Fukuda CBRC INOH database and annotation ontologies [abstract]
京都 7月3日(月) 11am Daniel Nilsson CMB, Programme for Genomics and Bioinformatics, Karolinska Institutet Genomic feature identification in trypanosomatid parasites [abstract]
京都 6月24日(土) 10am バイオインフォマティクス特別講義
京都 6月19日(月) 11am Claire Gaugain Centre de Bio-informatique de Bordeaux, Universite de Bordeaux 2 Integration and representation of biological data [abstract]
京都 6月12日(月) 11am Jose Carlos Clemente Litran JAIST Phylogenetic reconstruction from metabolic pathway alignment [abstract]
京都 6月9日(金) 1:30pm Tamas Horvath Department of Computer Science III, University of Bonn Mining and learning from graph structured data [abstract]
Gyorgy Turan University of Illinois at Chicago, Chicago, USA and Hungarian Academy of Sciences Remarks on learning and commonsense reasoning [abstract]
京都 5月29日(月) 11am Paul Horton CBRC Protein subcellular localization prediction with WoLF PSORT [abstract]
京都 5月22日(月) 11am 有田 正規 東京大学大学院・新領域創成科学研究科 化合物マススペクトルデータベースの構築 [abstract]
京都 5月8日(月) 11am Tatsuo Shibata Department of mathematical and life sciences, Hiroshima university Network basis of stripes formation and constructive decoding of developmental program [abstract]

平成17年度 (2005年4月〜2006年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 2006年
2pm Andrew J. Bordner Oak Ridge National Laboratory, USA Learning from structure: Predicting protein-protein interfaces and peptide-MHC binding affinities [abstract]
京都 3月27日(月) 11am Claus-W. von der Lieth German Cancer Research Centre The challenges of informatics for high throughput glycomics analysis of disease-associated sugar chains [abstract]
京都 3月20日(月) 11am Yoko Ishino Graduate School of Science, Hiroshima University Mass spectrometry-based expression proteomics and gene annotation of microbes[abstract]
京都 3月6日(月) 11am Jun-ichi Imura Tokyo Institute of Technology Control of hybrid systems and its application to gene regulatory networks [abstract]
京都 1月30日(月) 11am Falk Schreiber Institute of Plant Genetics and Crop Plant Research Gatersleben Visual network analysis for systems biology [abstract]
京都 1月23日(月) 11am Kosuke Morikawa Institute for Protein Research, Osaka University Substrate channeling mechanism as revealed from the crystal structure of a fatty acid beta-oxidation multienzyme complex [abstract]
京都 2005年
1pm Pierre Baldi University of California, Irvine Prediction of protein structures on a genomic scale [abstract]
東京 12月12日(月) 11am Junichi Watanabe Institute of Medical Science, University of Tokyo Full-malaria: a database of full-length cDNA from malaria and toxoplasma parasites
京都 11月28日(月) 11am 廣明 秀一 横浜市立大学大学院・国際総合科学研究科 NMRを利用した創薬シーズ蛋白質ドメインを発見するための方法論 [ abstract ]
京都 11月21日(月) 11am Christian Lemer Free University of Brussels KEGG2BioPAX - The development of a converter
京都 10月17日(月) 11am Akihiro Inokuchi IBM Japan Ltd., Tokyo Research Laboratory 頻出グラフマイニングと化合物データへの応用
京都 6月6日(月) 11am Gabriel Valiente Technical University of Catalonia Efficient validation of metabolic pathway databases [abstract]
京都 5月23日(月) 11am Marco Cuturi Ecole des Mines de Paris The probabilistic approach to kernel methods and its applications to bioinformatics [abstract]
京都 5月16日(月) 4pm Luonan Chen Osaka Sangyo University Local alignment of protein structure by linear programming [abstract]
11am Xiang-Sun Zhang Academy of Mathematics and Systems Science, Chinese Academy of Sciences Deterministic optimization methods for haplotyping problem [abstract]
京都 4月26日(火) 2pm Birgit Pils Wuerzburg University The nature of functional sites
東京 4月25日(月) 11am Nozomi Nagano CBRC EzCatDB: Catalytic-mechanism database: Analysis of enzyme reactions based on structures [abstract]
京都 4月11日(月) 11am Daisuke Shibata Kazusa DNA Research Institute Integration of transcriptional and metabolomic data

平成16年度 (2004年4月〜2005年3月)
場所 日時 スピーカー 所属機関 タイトル
京都 2005年
5pm Ramiro Barrantes University of Vermont UVM Biodesktop: A flexible, secure software system that permits data,
database, and user profile maintainance for biological researchers [abstract]
京都 3月28日(月) 11am Hiroshi Nagamochi Kyoto University One-sided crossing minimization of bipartite graphs [abstract]
京都 2月14日(月) 11am Ichigaku Takigawa Hokkaido University Statistical pattern classification and convex subclass method [abstract]
京都 2004年
11am Tatiana Tatusova NCBI, NLM, NIH Microbial genome resources at NCBI [abstract]
京都 11月29日(月) 11am Ryo Yoshida Institute of Statistical Mathematics Transcriptional module-based clustering via mixed factors model [abstract]
京都 11月22日(月) 11am Shigeki Mitaku Nagoya University Studies of physicochemical signals in amino acid sequences
-- Charge distribution of proteins -- [abstract]
京都 11月17日(水) 16pm David Liberles University of Bergen, Norway Towards an understanding of genome evolution [abstract]
京都 11月15日(月) 11am Jean-Philippe Vert Ecole des Mines de Paris  
京都2 10月21日(月) 11am Michael K. Ng University of Hong Kong On discovery of extremely low-dimensional clusters using semi-supervised projected clustering [abstract]
京都2 10月4日(月) 11am Fung Siu Leung University of Hong Kong Building genetic networks in gene expression patterns
京都2 9月13日(月) 11am Tadashi Kadowaki Kyoto University Graduate School of Pharmaceutical Sciences Finding splicing variants by gene expression data [abstract]
京都2 9月6日(月) 11am Hisashi Kashima IBM Tokyo Research Laboratory A kernel-based approach to sequence labeling problems [abstract]
京都2 7月26日(月) 11am Birgit Pils Wurzburg University Inactive enyzme-homologues find new function in regulatory processes [abstract]
京都2 7月15日(木) 2pm Koji Tsuda Max Plank Institute for Biological Cybernetics and AIST Computational Biology Research Center Learning kernels from biological networks by maximizing entropy [abstract]
京都2 6月7日(月) 11am Jian-Qin Liu ATR Network Informatics Laboratories Kinase computing: exploring computational mechanism by signaling pathways in cells [abstract]

平成15年度 (2003年4月〜2004年3月)
場所 日時 スピーカー 所属機関 タイトル
京都2 2004年
11am 上田 泰己 理研 発生・再生科学総合研究センター "Rich-travel-more" mechanism underlying heterogeneous organization of gene expression from E. coli to human [abstract]
京都2 2月9日(月) 11am Asa Karlsson Wheelock University of California Davis Techniques for quantitative in vivo studies of the lung proteome [abstract]
京都2 2月2日(月) 11am Elmar Heinzle Saarland University, Germany Metabolic flux analysis: methods and applications using mass spectrometry
京都2 2003年
11am Barry Smith IFOMIS, University of Leipzig What are classes in biology? - a brief introduction of ontology
京都1 10月31日(金) 2pm Koji Tsuda Max Plank Institute for Biological Cybernetics Kernel matrix completion theory and applications to biological data [abstract]
京都2 10月27日(月) 11am Jean-Philippe Vert Ecole des Mines de Paris Kernel methods in bioinformatics: state-of-the-art and future [abstract]
京都1 10月24日(金) 3pm 渋谷 哲郎 日本IBM(株)東京基礎研究所 高速配列検索技術とその遺伝子発見への応用
京都1 10月22日(水) 4pm 白井 宏樹 山之内製薬株式会社 ゲノム創薬の基盤整備としてのBioinformatics研究
京都2 10月20日(月) 11am Daisuke Kihara Purdue University PDB is a covering set of small protein structures [abstract]
京都2 10月15日(水) 11am Kyoung Tai No Yonsei University In silico drug discovery system [abstract]
京都2 10月9日(木) 4pm Levchenko Maria Orekhovich Inst., Russia PASS:化合物の生物活性を予測するコンピューターシステム
京都2 9月24日(月) 11am Michael Y. Galperin NCBI Complete microbial genomes: a long way to complete understanding
京都2 8月5日(月) 11am 時田 恵一郎 大阪大学サイバーメディアセンター 複雑な生物ネットワークにおける安定性と多様性の維持メカニズム [abstract]
京都2 7月14日(月) 4pm Marco Cuturi Ecole des Mines de Paris A covariance kernel derived from text compression tools [abstract]
東京 5月19日(月) 1pm Chris J. Myers University of Utah Stochastic asychronous circuit analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
京都2 5月12日(月) 11am 望月 敦史 基礎生物学研究所 遺伝子の発現切り替えがもたらすネットワークの一般的性質 [abstract]
京都2 4月21日(月) 11am Magnus Halldorson University of Iceland Design of a marker set for a whole genome scan for cancer [abstract]

平成14年度 (2002年10月〜2003年3月)
場所 日時 スピーカー 所属機関 タイトル
京都2 2003年
11am 大久保 公策 九州大学生体防御医学研究所 医学知識をどうやって計算に使うのか? BOBとresolution matrices [abstract]
京都2 2月14日(金) 11am Eric Westhof Universite Louis Pasteur, Strasbourg, France Classification of non-watson-crick base pairs and recognition of RNA motifs [abstract]
京都2 1月30日(木) 11am 川嵜 敏祐 京都大学薬学部 ポストゲノム糖鎖生物学 [abstract]
京都2 1月20日(月) 11am 佐竹 炎 サントリー生有研 糖鎖生物学研究:現状と今後の展望 [abstract]
京都2 1月6日(月) 4pm 渡邊 日出海 奈良先端大 ゲノム進化解析 [abstract]
京都1 2002年
11am Ludwig Eichinger Universitat zu Koln, Germany The dictyostelium genome project -- status and prospects [abstract]
京都1 11月18日(月) 11am 伊藤 隆司 金沢大学がん研究所 蛋白質相互作用の系統的解析:カタログ化から機能的解釈へ [abstract]
京都1 11月8日(金) 11am Sarah Teichmann MRC-LMB, Cambridge, UK The evolution of small molecule metabolic enzymes [abstract]
京都1 10月28日(月) 11am 西川 建 遺伝研 生命情報・DDBJ 研究センター タンパク質の立体構造予測:研究動向と応用研究など [abstract]
京都1 10月15日(火) 10am Susan K. Bromberg Medical College of Wisconsin Rat Genome Database (RGD): a resource for research
京都1 10月7日(月) 11am Athel Cornish-Bowden CNRS-Marseille, France Metabolic analysis as a tool in drug design [abstract]